PRECISION IN PATHOGEN DETECTION: ENHANCED LAMP ASSAY FOR BRUCELLA ABORTUS WITH AND WITHOUT LOOP PRIMERS

Main Article Content

Arif Ullah
Muhammad Yasir Zahoor
Muhammad Avais
Muhammad Imran

Keywords

Brucellosis, Loop-Mediated Isothermal Amplification (LAMP), Brucella abortus, loop primers

Abstract

Brucellosis, a zoonotic disease caused by Brucella species, is a significant public health concern worldwide. The Loop-Mediated Isothermal Amplification (LAMP) assay is a rapid and sensitive diagnostic tool that can be used to detect Brucella abortus. In the current study, we evaluate the efficiency of LAMP assay with and without loop primers with a set of primers used to detect Brucella abortus. We found that the addition of loop primers did not enhance the amplification or detection capacity of the LAMP assay. All samples were successfully amplified in this study without the use of loop primers and hence the results indicate that loop primers are not always necessary when carrying out the LAMP assay for identification of Brucella abortus. It is different from earlier investigations that indicated optimum configuration of LAMP assays with the incorporation of loop primers. Because of these findings, it is possible to conclude that the position of loop primers applied in LAMP assays may depend on the target sequence and, thus, the possibility of their exclusion can be considered as the best strategy. The findings of this particular study have implications to the design and enhancement of the LAMP assays for the identification of Brucella abortus and also other diseases. This allows for the reduction in the number of primers used in LAMP assays, contributing to lowering the overall cost and the level of complexity associated with this technique, which is important for point-of-care diagnostics in regions of varying resource availability.

Abstract 0 | PDF Downloads 0

References

1. Iqbal M, Fatmi Z, Khan MA. Brucellosis in Pakistan: a neglected zoonotic disease. The Journal of the Pakistan Medical Association. 2020;70(9):1625.
2. Jamil T, Khan AU, Saqib M, Hussain MH, Melzer F, Rehman A, et al. Animal and human brucellosis in Pakistan. Frontiers in Public Health. 2021;9:660508.
3. Hinić V, Brodard I, Thomann A, Holub M, Miserez R, Abril C. IS 711-based real-time PCR assay as a tool for detection of Brucella spp. in wild boars and comparison with bacterial isolation and serology. BMC Veterinary Research. 2009;5:1-8.
4. Ali S, Ali Q, Neubauer H, Melzer F, Elschner M, Khan I, et al. Seroprevalence and risk factors associated with brucellosis as a professional hazard in Pakistan. Foodborne Pathogens and Disease. 2013;10(6):500-5.
5. Young EJ. Clinical manifestations of human brucellosis. Brucellosis: CRC Press; 2020. p. 97-126.
6. Yang X, Wang Y, Liu Y, Huang J, Tan Q, Ying X, et al. A label-based polymer nanoparticles biosensor combined with loop-mediated isothermal amplification for rapid, sensitive, and highly specific identification of Brucella abortus. Frontiers in Bioengineering and Biotechnology. 2021;9:758564.
7. Faucher B, Miermont F, Ranque S, Franck J, Piarroux R. Optimization of Toxoplasma gondii DNA extraction from amniotic fluid using NucliSENS easyMAG and comparison with QIAamp DNA minikit. European Journal of Clinical Microbiology & Infectious Diseases. 2012;31:1035-9.
8. Sambrook J, Russell DW. Detection of DNA in agarose gels. Molecular Cloning, A Laboratory Manual,(3rd Ed.) Cold Spring Harbor Laboratory Press, New York. 2001:5-14.
9. Ohtsuki R, Kawamoto K, Kato Y, Shah MM, Ezaki T, Makino SI. Rapid detection of Brucella spp. by the loop-mediated isothermal amplification method. Journal of Applied Microbiology. 2008;104(6):1815-23.
10. Notomi T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Research. 2000;28(12):63e.
11. Daddy Gaoh S, Kweon O, Lee Y-J, LiPuma JJ, Hussong D, Marasa B, et al. Loop-mediated isothermal amplification (LAMP) assay for detecting Burkholderia cepacia complex in non-sterile pharmaceutical products. Pathogens. 2021;10(9):1071.
12. Bruijns B, Hoekema T, Oomens L, Tiggelaar R, Gardeniers H. Performance of spectrophotometric and fluorometric DNA quantification methods. Analytica. 2022;3(3):371-84.
13. Nagamine K, Watanabe K, Ohtsuka K, Hase T, Notomi T. Loop-mediated isothermal amplification reaction using a nondenatured template. Clinical Chemistry. 2001;47(9):1742-3.
14. Enomoto Y, Yoshikawa T, Ihira M, Akimoto S, Miyake F, Usui C, et al. Rapid diagnosis of herpes simplex virus infection by a loop-mediated isothermal amplification method. Journal of Clinical Microbiology. 2005;43(2):951-5.
15. Imai M, Ninomiya A, Minekawa H, Notomi T, Ishizaki T, Van Tu P, et al. Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method. Journal of Virological Methods. 2007;141(2):173-80.
16. Modi M, Sharma K, Sharma M, Sharma A, Sharma N, Sharma S, et al. Multitargeted loop-mediated isothermal amplification for rapid diagnosis of tuberculous meningitis. The International Journal of Tuberculosis and Lung Disease. 2016;20(5):625-30.
17. Iwamoto T, Sonobe T, Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. Journal of Clinical Microbiology. 2003;41(6):2616-22.
18. Kim J, Park BG, Lim DH, Jang WS, Nam J, Mihn D-C, et al. Development and evaluation of a multiplex loop-mediated isothermal amplification (LAMP) assay for differentiation of Mycobacterium tuberculosis and non-tuberculosis mycobacterium in clinical samples. PLoS One. 2021;16(1):e0244753.
19. Wu Q, Pei J, Turse C, Ficht TA. Mariner mutagenesis of Brucella melitensis reveals genes with previously uncharacterized roles in virulence and survival. BMC Microbiology. 2006;6:1-15.
20. Peyrefitte CN, Boubis L, Coudrier D, Bouloy Ml, Grandadam M, Tolou HJ, et al. Real-time reverse-transcription loop-mediated isothermal amplification for rapid detection of Rift Valley fever virus. Journal of Clinical Microbiology. 2008;46(11):3653-9.
21. Shirshikov F, Bespyatykh J. Loop-mediated isothermal amplification: from theory to practice. Russian Journal of Bioorganic Chemistry. 2022;48(6):1159-74.

Most read articles by the same author(s)