ANTIBIOTIC RESISTANCE PATTERN AMONG STAPHYLOCOCCAL SPECIES ISOLATED FROM TERTIARY CARE HOSPITALS IN KARACHI, PAKISTAN: A CROSS-SECTIONAL STUDY

Main Article Content

Sumayya Anas
Hassan Bin Asif
Saiqa Tabassum
Rakhshinda younus
Aneela Qureshi
Abdul Latif Mahesar

Keywords

Coagulase-negative Staphylococci (CoNS), Antimicrobial resistance, Multidrug resistance, Extensively drug-resistant bacteria, Antibiotic susceptibility, Tertiary care hospitals

Abstract

Antimicrobial resistance among Staphylococcus species, including coagulase-negative staphylococci (CoNS), is a growing global health threat, especially in developing countries like Pakistan, where misuse of antibiotics and poor infection control fuel resistance. These bacteria cause a wide range of infections, from skin conditions to life-threatening bloodstream infections, and their increasing resistance limits treatment options.


Objectives: To isolate and identify Staphylococcus species from clinical samples in tertiary care hospitals, determine their antibiotic susceptibility patterns, and assess their pathogenic potential through multidrug-resistant (MDR) and extensively drug-resistant (XDR) profiles.


Methodology: A cross-sectional study was conducted on 200 clinical samples from two tertiary care hospitals in Karachi. Samples were cultured on blood agar, and Staphylococcus species were identified using Gram staining, catalase, coagulase, and DNase tests. Antibiotic susceptibility was tested using the Kirby–Bauer disc diffusion method on Mueller–Hinton agar, following CLSI guidelines. MDR and XDR were defined using standard criteria, and data were analyzed with SPSS.


Results: Of 200 isolates, resistance was highest to erythromycin (71.5%), ciprofloxacin (66%), and fusidic acid (67.5%), with moderate resistance to amoxicillin-clavulanate (52%) and gentamicin (46%). Linezolid (98% sensitive) and vancomycin (94.5% sensitive) retained excellent activity. A significant proportion of isolates were MDR, with resistance more common in CoPS and in pus and urine samples.


Conclusion: Staphylococcus species in Karachi hospitals show alarming resistance to commonly used antibiotics, though last-resort drugs like linezolid and vancomycin remain effective. The high prevalence of MDR strains highlights the need for routine susceptibility testing, rational antibiotic use, and stronger infection control and stewardship programs.

Abstract 0 | Pdf Downloads 0

References

1. .Antimicrobial Resistance Collaborators . 2022. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet 399:629–655. doi: 10.1016/S0140-6736(21)02724-5
2. Shropshire WC, Konovalova A, McDaneld P, Gohel M, Strope B, Sahasrabhojane P, Tran CN, Greenberg D, Kim J, Zhan X, Aitken S, Bhatti M, Savidge TC, Treangen TJ, Hanson BM, Arias CA, Shelburne SA. 2022. Systematic analysis of mobile genetic elements mediating β-lactamase gene amplification in noncarbapenemase-producing carbapenem-resistant Enterobacterales bloodstream infections. mSystems 7:e0047622.
3. Tacconelli E, Carrara E, Savoldi A, Harbarth S, Mendelson M, Monnet DL, Pulcini C, Kahlmeter G, Kluytmans J, Carmeli Y, Ouellette M, Outterson K, Patel J, Cavaleri M, Cox EM, Houchens CR, Grayson ML, Hansen P, Singh N, Theuretzbacher U, Magrini N, WHO Pathogens Priority List Working Group . 2018. Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis. Lancet Infect Dis 18:318–327.
4. Rello J, Kalwaje Eshwara V, Lagunes L, Alves J, Wunderink RG, Conway-Morris A, Rojas JN, Alp E, Zhang Z. 2019. A global priority list of the TOp TEn resistant microorganisms (TOTEM) study at intensive care: a prioritization exercise based on multi-criteria decision analysis. Eur J Clin Microbiol Infect Dis 38:319–323.
5. Mancuso G, Midiri A, Gerace E, Biondo C. 2021. Bacterial antibiotic resistance: the most critical pathogens. Pathogens 10:1310.
6. Raoofi S, Pashazadeh Kan F, Rafiei S, Hosseinipalangi Z, Noorani Mejareh Z, Khani S, Abdollahi B, Seyghalani Talab F, Sanaei M, Zarabi F, et al. 2023. Global prevalence of nosocomial infection: a systematic review and meta-analysis. PLoS One 18:e0274248.
7. Allegranzi B, Bagheri Nejad S, Combescure C, Graafmans W, Attar H, Donaldson L, Pittet D. 2011. Burden of endemic health-care-associated infection in developing countries: systematic review and meta-analysis. Lancet 377:228–241.
8. Reynolds D, Burnham JP, Vazquez Guillamet C, McCabe M, Yuenger V, Betthauser K, Micek ST, Kollef MH. 2022. The threat of multidrug-resistant/extensively drug-resistant Gram-negative respiratory infections: another pandemic. Eur Respir Rev 31:166.
9. Dickstein Y, Temkin E, Ish Shalom M, Schwartz D, Carmeli Y, Schwaber MJ. 2019. Trends in antimicrobial resistance in Israel, 2014-2017. Antimicrob Resist Infect Control 8:96.
10. Magill SS, Edwards JR, Bamberg W, Beldavs ZG, Dumyati G, Kainer MA, Lynfield R, Maloney M, McAllister-Hollod L, Nadle J, Ray SM, Thompson DL, Wilson LE, Fridkin SK, Emerging Infections Program Healthcare-Associated Infections and Antimicrobial Use Prevalence Survey Team . 2014. Multistate point-prevalence survey of health care-associated infections. N Engl J Med 370:1198–1208.
11. Deurenberg RH, Bathoorn E, Chlebowicz MA, Couto N, Ferdous M, García-Cobos S, Kooistra-Smid AMD, Raangs EC, Rosema S, Veloo ACM, Zhou K, Friedrich AW, Rossen JWA. 2017. Application of next generation sequencing in clinical microbiology and infection prevention. J Biotechnol 243:16–24.
12. Shrestha R, Luterbach CL, Dai W, Komarow L, Earley M, Weston G, Herc E, Jacob JT, Salata R, Wong D, Anderson D, Rydell KB, Arias CA, Chen L, van Duin D, MDRO Investigators . 2022. Characteristics of community-acquired carbapenem-resistant Enterobacterales. J Antimicrob Chemother 77:2763–2771.
13. Reyes J, Komarow L, Chen L, Ge L, Hanson BM, Cober E, Herc E, Alenazi T, Kaye KS, Garcia-Diaz J, et al. 2023. Global epidemiology and clinical outcomes of carbapenem-resistant Pseudomonas aeruginosa and associated carbapenemases (POP): a prospective cohort study. Lancet Microbe 4:e159–e170.
14. Luterbach CL, Chen L, Komarow L, Ostrowsky B, Kaye KS, Hanson B, Arias CA, Desai S, Gallagher JC, Novick E, Pagkalinawan S, Lautenbach E, Wortmann G, Kalayjian RC, Eilertson B, Farrell JJ, McCarty T, Hill C, Fowler VG, Kreiswirth BN, Bonomo RA, van Duin D, Multi-Drug Resistant Organism Network Investigators Network Investigators and the Antibacterial Resistance Leadership Group . 2023. Transmission of carbapenem-resistant Klebsiella pneumoniae in US hospitals. Clin Infect Dis 76:229–237.
15. Bock A, Hanson BM, Ruffin F, Parsons JB, Park LP, Sharma-Kuinkel B, Mohnasky M, Arias CA, Fowler VG, Thaden JT. 2023. Clinical and molecular analyses of recurrent Gram-negative bloodstream infections. Clin Infect Dis 76:e1285–e1293.
16. Shelburne SA, Kim J, Munita JM, Sahasrabhojane P, Shields RK, Press EG, Li X, Arias CA, Cantarel B, Jiang Y, Kim MS, Aitken SL, Greenberg DE. 2017. Whole-genome sequencing accurately identifies resistance to extended-spectrum β-lactams for major gram-negative bacterial pathogens. Clin Infect Dis 65:738–745.
17. Kim J, Greenberg DE, Pifer R, Jiang S, Xiao G, Shelburne SA, Koh A, Xie Y, Zhan X. 2020. VAMPr: VAriant mapping and prediction of antibiotic resistance via explainable features and machine learning. PLoS Comput Biol 16:e1007511.
18. Shropshire WC, Aitken SL, Pifer R, Kim J, Bhatti MM, Li X, Kalia A, Galloway-Peña J, Sahasrabhojane P, Arias CA, Greenberg DE, Hanson BM, Shelburne SA. 2021. IS26-mediated amplification of blaOXA-1 and blaCTX-M-15 with concurrent outer membrane porin disruption associated with de novo carbapenem resistance in a recurrent bacteraemia cohort. J Antimicrob Chemother 76:385–395. doi: 10.1093/jac/dkaa447
19. Shropshire WC, Dinh AQ, Earley M, Komarow L, Panesso D, Rydell K, Gómez-Villegas SI, Miao H, Hill C, Chen L, Patel R, Fries BC, Abbo L, Cober E, Revolinski S, Luterbach CL, Chambers H, Fowler VG, Bonomo RA, Shelburne SA, Kreiswirth BN, van Duin D, Hanson BM, Arias CA. 2022. Accessory genomes drive independent spread of carbapenem-resistant Klebsiella pneumoniae clonal groups 258 and 307 in Houston, TX. MBio 13:e0049722.
20. Shropshire WC, Konovalova A, McDaneld P, Gohel M, Strope B, Sahasrabhojane P, Tran CN, Greenberg D, Kim J, Zhan X, Aitken S, Bhatti M, Savidge TC, Treangen TJ, Hanson BM, Arias CA, Shelburne SA. 2022. Systematic analysis of mobile genetic elements mediating β-lactamase gene amplification in noncarbapenemase-producing carbapenem-resistant Enterobacterales bloodstream infections. mSystems 7:e0047622.
21. 21.MacGowan AP, on behalf of the BWPoRS. Clinical implications of antimicrobial resistance for therapy. J Antimicrob Chemother 2008; 62(suppl 2): 105–114.
22. Paterson DL. The epidemiological profile of infections with multi drug-resistant Pseudomonas aeruginosa and Acinetobacter species. ClinInfect Dis 2006; 43 (suppl 2): 43–48.
23. Kallen AJ, Hidron AI, Patel J, Srinivasan A. Multidrug resistance among gram-negative pathogens that caused healthcare-associatedinfections reported to the National Healthcare Safety Network,2006-2008. Infect Control Hosp Epidemiol 2010; 31: 528–531.
24. Pillar CM, Draghi DC, Sheehan DJ, Sahm DF. Prevalence of multidrug-resistant, methicillin-resistant Staphylococcus aureus in the United States: findings of the stratified analysis of the 2004 to 2005LEADER Surveillance Programs. Diagn Microbiol Infect Dis 2008; 60:221–224.
25. Seas C, Hernandez K, Ramos R et al. Oxacillin-resistant and multidrug-resistant Staphylococcus aureus in Lima, Peru. Infect Control HospEpidemiol 2006; 27: 198–200.
26. Jeong HY, Lee JE, Choi BK et al. Molecular epidemiology of community-associated antimicrobial-resistant Staphylococcus aureus inSeoul, Korea (2003): pervasiveness of multidrug-resistant SCCmectype II methicillin-resistant S. aureus. Microb Drug Resist 2007; 13:
27. 178–185.
28. Critchley IA, Draghi DC, Sahm DF, Thornsberry C, Jones ME, Karlowsky JA. Activity of daptomycin against susceptible and multidrug-resistant Gram-positive pathogens collected in the SECURE study (Europe)during 2000–2001. J Antimicrob Chemother 2003; 51: 639–649.
29. O’Fallon E, Gautam S, D’Agata EMC. Colonization with multidrugresistant gram-negative bacteria: prolonged duration and frequent cocolonization. Clin Infect Dis 2009; 48: 1375–1381.